Running nixpkgs-update (https://nix-community.org/update-bot/) with UPDATE_INFO: R 4.6.0 -> 4.6.1 https://repology.org/project/r/versions
attrpath: R
Checking auto update branch...
No auto update branch exists
[version] 
[version] updated version and sha256
[rustCrateVersion] 
[rustCrateVersion] No cargoHash found
[golangModuleVersion] 
[golangModuleVersion] Not a buildGoModule package with vendorHash
[npmDepsVersion] 
[npmDepsVersion] No npmDepsHash
[updateScript] 
[updateScript] skipping because derivation has no updateScript
Diff after rewrites:
diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix
index 6376bf4f08e8..8c26eb76a171 100644
--- a/pkgs/applications/science/math/R/default.nix
+++ b/pkgs/applications/science/math/R/default.nix
@@ -45,7 +45,7 @@ assert (!blas.isILP64) && (!lapack.isILP64);
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "R";
-  version = "4.6.0";
+  version = "4.6.1";
 
   src =
     let
@@ -53,7 +53,7 @@ stdenv.mkDerivation (finalAttrs: {
     in
     fetchurl {
       url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz";
-      hash = "sha256-uNybRUNmDHtZa4eTjfUyOUNQNgl2Un00QijuDtEuRew=";
+      hash = "sha256-TabmHSwKrF8UoufkMstfzCae/oPaQpMFC6fwPf9OLPQ=";
     };
 
   outputs = [

Successfully finished processing
[check][nixpkgs-review]
## `nixpkgs-review` result

Generated using [`nixpkgs-review`](https://github.com/Mic92/nixpkgs-review).

Command: `nixpkgs-review --extra-nixpkgs-config '{ allowBroken = false; }'`
Commit: `4e31392b47bb38587e519832f32ad155fd821bc3`

---
### `x86_64-linux`
<details>
  <summary>:fast_forward: 1 package blacklisted:</summary>
  <ul>
    <li>tests.pkg-config.defaultPkgConfigPackages.tests-combined</li>
  </ul>
</details>
<details>
  <summary>:x: 10 packages failed to build:</summary>
  <ul>
    <li>pyspread</li>
    <li>python314Packages.otter-grader</li>
    <li>python313Packages.otter-grader</li>
    <li>rstudio-server</li>
    <li>rstudioServerWrapper</li>
    <li>rstudioWrapper</li>
    <li>rstudio</li>
    <li>sage</li>
    <li>sageWithDoc</li>
    <li>yap</li>
  </ul>
</details>
<details>
  <summary>:white_check_mark: 38 packages built:</summary>
  <ul>
    <li>ark</li>
    <li>breseq</li>
    <li>R</li>
    <li>git-unroll</li>
    <li>golden-cheetah-bin</li>
    <li>diffoscope</li>
    <li>jetbrains.dataspell</li>
    <li>macaulay2</li>
    <li>ocamlPackages.ocaml-r</li>
    <li>ocamlPackages_latest.ocaml-r</li>
    <li>postgresql14Packages.plr</li>
    <li>postgresql15Packages.plr</li>
    <li>postgresql16Packages.plr</li>
    <li>postgresql17Packages.plr</li>
    <li>postgresql18Packages.plr</li>
    <li>postgresql19Packages.plr</li>
    <li>jupyter-all</li>
    <li>python313Packages.cnvkit</li>
    <li>python313Packages.rchitect</li>
    <li>python313Packages.rpy2</li>
    <li>python313Packages.rpy2-rinterface</li>
    <li>python313Packages.rpy2-robjects</li>
    <li>python314Packages.cnvkit</li>
    <li>python314Packages.rchitect</li>
    <li>python314Packages.rpy2</li>
    <li>python314Packages.rpy2-rinterface</li>
    <li>python314Packages.rpy2-robjects</li>
    <li>rWrapper</li>
    <li>radian</li>
    <li>radianWrapper</li>
    <li>resorter</li>
    <li>quarto</li>
    <li>spark</li>
    <li>spark3</li>
    <li>spark_3_4</li>
    <li>spip</li>
    <li>tests.pkg-config.defaultPkgConfigPackages.libR</li>
    <li>vscode-extensions.reditorsupport.r</li>
  </ul>
</details>


Automatic update generated by [nixpkgs-update](https://github.com/nix-community/nixpkgs-update) tools. This update was made based on information from https://repology.org/project/r/versions.

meta.description for R is: Free software environment for statistical computing and graphics

meta.homepage for R is: http://www.r-project.org/




###### Updates performed
- Version update

###### To inspect upstream changes





###### Impact

<b>Checks done</b>

---

- built on NixOS
- The tests defined in `passthru.tests`, if any, passed
- found 4.6.1 with grep in /nix/store/bwbn5qgqnjzmrw6jsybd66s9mx2fmvc3-R-4.6.1
- found 4.6.1 in filename of file in /nix/store/bwbn5qgqnjzmrw6jsybd66s9mx2fmvc3-R-4.6.1

---

<details>
<summary>
<b>Rebuild report</b> (if merged into master) (click to expand)
</summary>

```
55 total rebuild path(s)

53 package rebuild(s)

First fifty rebuilds by attrpath

R
ark
breseq
diffoscope
git-unroll
golden-cheetah-bin
jasp-desktop
jetbrains.dataspell
jupyter-all
macaulay2
ocamlPackages.ocaml-r
ocamlPackages_latest.ocaml-r
postgresql14Packages.plr
postgresql15Packages.plr
postgresql16Packages.plr
postgresql17Packages.plr
postgresql18Packages.plr
postgresql19Packages.plr
postgresqlPackages.plr
pyspread
python313Packages.cnvkit
python313Packages.otter-grader
python313Packages.rchitect
python313Packages.rpy2
python313Packages.rpy2-rinterface
python313Packages.rpy2-robjects
python314Packages.cnvkit
python314Packages.otter-grader
python314Packages.rchitect
python314Packages.rpy2
python314Packages.rpy2-rinterface
python314Packages.rpy2-robjects
quarto
radian
resorter
rstudio
rstudio-server
rstudioServerWrapper
rstudioWrapper
sage
sageWithDoc
spark
spark3
spark4
spark_3_4
spark_3_5
spark_4_0
spip
tests.pkg-config.defaultPkgConfigPackages.libR
```

</details>

<details>
<summary>
<b>Instructions to test this update</b> (click to expand)
</summary>

---

Either **download from the cache**:
```
nix-store -r /nix/store/bwbn5qgqnjzmrw6jsybd66s9mx2fmvc3-R-4.6.1 \
  --option binary-caches 'https://cache.nixos.org/ https://nixpkgs-update-cache.nix-community.org/' \
  --option trusted-public-keys '
  nixpkgs-update-cache.nix-community.org-1:U8d6wiQecHUPJFSqHN9GSSmNkmdiFW7GW7WNAnHW0SM=
  cache.nixos.org-1:6NCHdD59X431o0gWypbMrAURkbJ16ZPMQFGspcDShjY=
  '
```
(The nixpkgs-update cache is only trusted for this store-path realization.)
For the cached download to work, your user must be in the `trusted-users` list or you can use `sudo` since root is effectively trusted.

Or, **build yourself**:
```
nix-build -A R https://github.com/r-ryantm/nixpkgs/archive/4e31392b47bb38587e519832f32ad155fd821bc3.tar.gz
```
Or:
```
nix build github:r-ryantm/nixpkgs/4e31392b47bb38587e519832f32ad155fd821bc3#R
```

After you've downloaded or built it, look at the files and if there are any, run the binaries:
```
ls -la /nix/store/bwbn5qgqnjzmrw6jsybd66s9mx2fmvc3-R-4.6.1
ls -la /nix/store/bwbn5qgqnjzmrw6jsybd66s9mx2fmvc3-R-4.6.1/bin
```

---

</details>
<br/>



### Pre-merge build results

We have automatically built all packages that will get rebuilt due to
this change.

This gives evidence on whether the upgrade will break dependent packages.
Note sometimes packages show up as _failed to build_ independent of the
change, simply because they are already broken on the target branch.

## `nixpkgs-review` result

Generated using [`nixpkgs-review`](https://github.com/Mic92/nixpkgs-review).

Command: `nixpkgs-review --extra-nixpkgs-config '{ allowBroken = false; }'`
Commit: `4e31392b47bb38587e519832f32ad155fd821bc3`

---
### `x86_64-linux`
<details>
  <summary>:fast_forward: 1 package blacklisted:</summary>
  <ul>
    <li>tests.pkg-config.defaultPkgConfigPackages.tests-combined</li>
  </ul>
</details>
<details>
  <summary>:x: 10 packages failed to build:</summary>
  <ul>
    <li>pyspread</li>
    <li>python314Packages.otter-grader</li>
    <li>python313Packages.otter-grader</li>
    <li>rstudio-server</li>
    <li>rstudioServerWrapper</li>
    <li>rstudioWrapper</li>
    <li>rstudio</li>
    <li>sage</li>
    <li>sageWithDoc</li>
    <li>yap</li>
  </ul>
</details>
<details>
  <summary>:white_check_mark: 38 packages built:</summary>
  <ul>
    <li>ark</li>
    <li>breseq</li>
    <li>R</li>
    <li>git-unroll</li>
    <li>golden-cheetah-bin</li>
    <li>diffoscope</li>
    <li>jetbrains.dataspell</li>
    <li>macaulay2</li>
    <li>ocamlPackages.ocaml-r</li>
    <li>ocamlPackages_latest.ocaml-r</li>
    <li>postgresql14Packages.plr</li>
    <li>postgresql15Packages.plr</li>
    <li>postgresql16Packages.plr</li>
    <li>postgresql17Packages.plr</li>
    <li>postgresql18Packages.plr</li>
    <li>postgresql19Packages.plr</li>
    <li>jupyter-all</li>
    <li>python313Packages.cnvkit</li>
    <li>python313Packages.rchitect</li>
    <li>python313Packages.rpy2</li>
    <li>python313Packages.rpy2-rinterface</li>
    <li>python313Packages.rpy2-robjects</li>
    <li>python314Packages.cnvkit</li>
    <li>python314Packages.rchitect</li>
    <li>python314Packages.rpy2</li>
    <li>python314Packages.rpy2-rinterface</li>
    <li>python314Packages.rpy2-robjects</li>
    <li>rWrapper</li>
    <li>radian</li>
    <li>radianWrapper</li>
    <li>resorter</li>
    <li>quarto</li>
    <li>spark</li>
    <li>spark3</li>
    <li>spark_3_4</li>
    <li>spip</li>
    <li>tests.pkg-config.defaultPkgConfigPackages.libR</li>
    <li>vscode-extensions.reditorsupport.r</li>
  </ul>
</details>

---

###### Maintainer pings

cc @jbedo @timokau @7c6f434c @collares for [testing](https://github.com/nix-community/nixpkgs-update/blob/main/doc/nixpkgs-maintainer-faq.md#r-ryantm-opened-a-pr-for-my-package-what-do-i-do).

> [!TIP]
> As a maintainer, if your package is located under `pkgs/by-name/*`, you can comment **`@NixOS/nixpkgs-merge-bot merge`** to automatically merge this update using the [`nixpkgs-merge-bot`](https://github.com/NixOS/nixpkgs/blob/master/ci/README.md#nixpkgs-merge-bot).
https://api.github.com/repos/NixOS/nixpkgs/pulls/540949