Running nixpkgs-update (https://nix-community.org/update-bot/) with UPDATE_INFO: bowtie2 2.5.4 -> 2.5.5 https://github.com/BenLangmead/bowtie2/releases
attrpath: bowtie2
Checking auto update branch...
No auto update branch exists
[version] 
[version] updated version and sha256
[rustCrateVersion] 
[rustCrateVersion] No cargoHash found
[golangModuleVersion] 
[golangModuleVersion] Not a buildGoModule package with vendorHash
[npmDepsVersion] 
[npmDepsVersion] No npmDepsHash
[updateScript] 
[updateScript] skipping because derivation has no updateScript
Diff after rewrites:
diff --git a/pkgs/by-name/bo/bowtie2/package.nix b/pkgs/by-name/bo/bowtie2/package.nix
index 5b1f4f3fc2e2..0fa23a135dd5 100644
--- a/pkgs/by-name/bo/bowtie2/package.nix
+++ b/pkgs/by-name/bo/bowtie2/package.nix
@@ -13,14 +13,14 @@
 
 stdenv.mkDerivation (finalAttrs: {
   pname = "bowtie2";
-  version = "2.5.4";
+  version = "2.5.5";
 
   src = fetchFromGitHub {
     owner = "BenLangmead";
     repo = "bowtie2";
     tag = "v${finalAttrs.version}";
     fetchSubmodules = true;
-    hash = "sha256-ZbmVOItfAgKdsMrvQIXgKiPtoQJZYfGblCGDoNPjvTU=";
+    hash = "sha256-Mad1VSW6hDdxvEeSg95/Rgp+iVgStTUkI03e6UCHaNk=";
   };
 
   # because of this flag, gcc on aarch64 cannot find the Threads

Received ExitFailure 1 when running
Raw command: nix-build --option sandbox true --arg config "{ allowUnfree = true; allowAliases = false; }" --arg overlays "[ ]" -A bowtie2
nix build failed.
got build log for 'bowtie2' from 'daemon'
Running phase: unpackPhase
@nix { "action": "setPhase", "phase": "unpackPhase" }
unpacking source archive /nix/store/5rw4rzyv0qjc99307bddfkpgimmp2kcm-source
source root is source
Running phase: patchPhase
@nix { "action": "setPhase", "phase": "patchPhase" }
substituteStream() in derivation bowtie2-2.5.5: ERROR: pattern -m64 doesn't match anything in file 'CMakeLists.txt'