Running nixpkgs-update (https://nix-community.org/update-bot/) with UPDATE_INFO: freebayes 1.3.1 -> 1.3.10 https://github.com/ekg/freebayes/releases attrpath: freebayes Checking auto update branch... No auto update branch exists [version] [version] updated version and sha256 [rustCrateVersion] [rustCrateVersion] No cargoHash found [golangModuleVersion] [golangModuleVersion] Not a buildGoModule package with vendorHash [npmDepsVersion] [npmDepsVersion] No npmDepsHash [updateScript] [updateScript] skipping because derivation has no updateScript Diff after rewrites: diff --git a/pkgs/by-name/fr/freebayes/package.nix b/pkgs/by-name/fr/freebayes/package.nix index dfcad223285a..4d60479ca90c 100644 --- a/pkgs/by-name/fr/freebayes/package.nix +++ b/pkgs/by-name/fr/freebayes/package.nix @@ -9,14 +9,14 @@ stdenv.mkDerivation (finalAttrs: { pname = "freebayes"; - version = "1.3.1"; + version = "1.3.10"; src = fetchFromGitHub { name = "freebayes-${finalAttrs.version}-src"; owner = "ekg"; repo = "freebayes"; tag = "v${finalAttrs.version}"; - sha256 = "035nriknjqq8gvil81vvsmvqwi35v80q8h1cw24vd1gdyn1x7bys"; + sha256 = "sha256-QK6EhdoszMLNaBdhEC4R1cjGAp/Fqlh0JurzVEEqtcM="; fetchSubmodules = true; }; Received ExitFailure 1 when running Raw command: nix-build --option sandbox true --arg config "{ allowUnfree = true; allowAliases = false; }" --arg overlays "[ ]" -A freebayes nix build failed. @nix { "action": "setPhase", "phase": "unpackPhase" } unpacking source archive /nix/store/199xifizfn9g55w9awqahg0xswnz5c5j-freebayes-1.3.10-src source root is freebayes-1.3.10-src Running phase: patchPhase @nix { "action": "setPhase", "phase": "patchPhase" } Running phase: updateAutotoolsGnuConfigScriptsPhase @nix { "action": "setPhase", "phase": "updateAutotoolsGnuConfigScriptsPhase" } Running phase: configurePhase @nix { "action": "setPhase", "phase": "configurePhase" } no configure script, doing nothing Running phase: buildPhase @nix { "action": "setPhase", "phase": "buildPhase" } no Makefile or custom buildPhase, doing nothing Running phase: installPhase @nix { "action": "setPhase", "phase": "installPhase" } install: creating directory '/nix/store/fnn8amh34082369kfsw03704pvm09q24-freebayes-1.3.10' install: creating directory '/nix/store/fnn8amh34082369kfsw03704pvm09q24-freebayes-1.3.10/bin' install: cannot stat 'bin/freebayes': No such file or directory install: cannot stat 'bin/bamleftalign': No such file or directory 'scripts/GenerateFreebayesRegions.R' -> '/nix/store/fnn8amh34082369kfsw03704pvm09q24-freebayes-1.3.10/bin/GenerateFreebayesRegions.R' 'scripts/bgziptabix' -> '/nix/store/fnn8amh34082369kfsw03704pvm09q24-freebayes-1.3.10/bin/bgziptabix' 'scripts/coverage_to_regions.py' -> '/nix/store/fnn8amh34082369kfsw03704pvm09q24-freebayes-1.3.10/bin/coverage_to_regions.py' 'scripts/fasta_generate_regions.py' -> '/nix/store/fnn8amh34082369kfsw03704pvm09q24-freebayes-1.3.10/bin/fasta_generate_regions.py' 'scripts/freebayes-parallel' -> '/nix/store/fnn8amh34082369kfsw03704pvm09q24-freebayes-1.3.10/bin/freebayes-parallel' 'scripts/generate_freebayes_region_scripts.sh' -> '/nix/store/fnn8amh34082369kfsw03704pvm09q24-freebayes-1.3.10/bin/generate_freebayes_region_scripts.sh' 'scripts/sam_add_rg.pl' -> '/nix/store/fnn8amh34082369kfsw03704pvm09q24-freebayes-1.3.10/bin/sam_add_rg.pl' 'scripts/samples.cnv' -> '/nix/store/fnn8amh34082369kfsw03704pvm09q24-freebayes-1.3.10/bin/samples.cnv' 'scripts/split_ref_by_bai_datasize.py' -> '/nix/store/fnn8amh34082369kfsw03704pvm09q24-freebayes-1.3.10/bin/split_ref_by_bai_datasize.py' 'scripts/update_version.sh' -> '/nix/store/fnn8amh34082369kfsw03704pvm09q24-freebayes-1.3.10/bin/update_version.sh' 'scripts/vcffirstheader' -> '/nix/store/fnn8amh34082369kfsw03704pvm09q24-freebayes-1.3.10/bin/vcffirstheader'